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ExpressionAtlas (version 1.0.3)

Download datasets from EMBL-EBI Expression Atlas

Description

This package is for searching for datasets in EMBL-EBI Expression Atlas, and downloading them into R for further analysis. Each Expression Atlas dataset is represented as a SimpleList object with one element per platform. Sequencing data is contained in a SummarizedExperiment object, while microarray data is contained in an ExpressionSet or MAList object.

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Version

Version

1.0.3

License

GPL (>= 3)

Maintainer

Maria Keays

Last Published

February 15th, 2017

Functions in ExpressionAtlas (1.0.3)

rnaseqExps

A SimpleList containing a dummy RNA-seq Expression Atlas dataset
searchAtlasExperiments

Search for Expression Atlas experiments
allExps

A SimpleList containing some dummy Expression Atlas datasets
atlasRes

A DataFrame listing some Expression Atlas experiments
getAtlasData

Download data from multiple Expression Atlas experiments
getAtlasExperiment

Download data for an Expression Atlas experiment