xue_species_info

<p>A data frame providing taxonomic information for the species included in xue_species_tree.</p>

datasets

Implements the statistic FAVA, an Fst-based Assessment of Variability across
vectors of relative Abundances, as well as a suite of helper functions which enable the
visualization and statistical analysis of relative abundance data. The 'FAVA' R package
accompanies the paper, “Quantifying compositional variability in microbial communities
with FAVA” by Morrison, Xue, and Rosenberg (2025) <doi:10.1073/pnas.2413211122>.

Maike Morrison

FAVA

Quantify Compositional Variability Across Relative Abundance
Vectors

xue_species_info function


<div class="section" id="xue-species-info">
<h3><code>xue_species_info</code></h3><p></p><p>
</p><p>A data frame with 1346 rows and 9 columns:</p><dl>
<dt>species_id</dt>
<dd><p>The species_id given in xue_microbiome_sample</p></dd><p></p><p><dt>kingdom, phylum, class, order, family, genus, species</dt>
<dd><p>The corresponding taxonomic category for each species</p></dd></p><p><dt>species_id_number</dt>
<dd><p>The numeric code associated with each species, as used in xue_species_tree</p></dd></p><p>
</p></dl><p></p><p></p></div>


Format

Table of species information — xue_species_info


<div class='section' id='xue-species-info'>
<h3><code>xue_species_info</code></h3>


<p>A data frame with 1346 rows and 9 columns:</p><dl>
<dt>species_id</dt>
<dd><p>The species_id given in xue_microbiome_sample</p></dd>

<dt>kingdom, phylum, class, order, family, genus, species</dt>
<dd><p>The corresponding taxonomic category for each species</p></dd>

<dt>species_id_number</dt>
<dd><p>The numeric code associated with each species, as used in xue_species_tree</p></dd>


</dl>

</div>


xue_species_info: Table of species information

Description

Usage

Arguments

Format

`xue_species_info`