xue_species_tree

<p>A phylogenetic tree in the Newick format.</p>

datasets

Implements the statistic FAVA, an Fst-based Assessment of Variability across
vectors of relative Abundances, as well as a suite of helper functions which enable the
visualization and statistical analysis of relative abundance data. The 'FAVA' R package
accompanies the paper, “Quantifying compositional variability in microbial communities
with FAVA” by Morrison, Xue, and Rosenberg (2025) <doi:10.1073/pnas.2413211122>.

Maike Morrison

FAVA

Quantify Compositional Variability Across Relative Abundance
Vectors

xue_species_tree function


<div class="section" id="xue-species-tree">
<h3><code>xue_species_tree</code></h3><p></p><p>
</p><p>A Newick tree.</p>
</div>


Format

Phylogenetic tree for the species included in xue_microbiome_sample — xue_species_tree


<div class='section' id='xue-species-tree'>
<h3><code>xue_species_tree</code></h3>


<p>A Newick tree.</p>
</div>


xue_species_tree: Phylogenetic tree for the species included in xue_microbiome_sample

Description

Usage

Arguments

Format

`xue_species_tree`