organisms

groupTypes

FEA_tools

GOEvidenceCodes


FGNet package includes the following data files: organisms, groupTypes and FEA_tools


Build and visualize functional gene and term networks from clustering of enrichment analyses in multiple annotation spaces. The package includes a graphical user interface (GUI) and functions to perform the functional enrichment analysis through DAVID, GeneTerm Linker, gage (GSEA) and topGO.

Sara Aibar

FGNet

Functional Gene Networks derived from biological enrichment analyses

organisms function

FGNet package includes the following data files: organisms, groupTypes and FEA_tools

FGNet data

groupTypes: Matrix with the group types supported by FGNet (cluster, metagroup and gene-term set).

FEA_tools:  Matrix with info about the FEA tools supported by FGNet.

GOEvidenceCodes:  Matrix with info about GO evidence codes. (from <url>http://geneontology.org/page/guide-go-evidence-codes</url>, on nov. 26, 2014.)

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organisms: FGNet data

Description

Usage

Arguments

Value