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FREddyPro (version 1.0)

Post-Processing EddyPro Full Output File

Description

Despike, ustar filtering, plotting, footprint modelling and general post-processing of a standard EddyPro full output file (LI-COR Inc 2011-2015 ).

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Version

Install

install.packages('FREddyPro')

Monthly Downloads

4

Version

1.0

License

GPL-3

Maintainer

Georgios Xenakis

Last Published

September 11th, 2016

Functions in FREddyPro (1.0)

Calculate

Kormann and Meixner 2001 flux footprint model
Average

Average flux footprint
distClean

Distributional cleaning
createTimestamp

Create a time stamp
fillTimestamp

Fill timestamp gaps
exportFootprintPoints

Write footprint as points
percentQC

Percent of each QC
plotDaily

Plot average daily patterns
plotQC

Plot using QC flags
polar2cart

Polar to cartesian
plotSpectra

Plot spectra
qcClean

Clean using QC flag
harwood

CSV EddyPro output file for Harwood forest
lue_model

Light use efficiency model
plotMonthly

Plot monthly averages
plotFootprint

Plot a tower footprint
removeOutliers

Remove outliers
removeDuplicates

Remove duplicates
plotDiurnal

Plot average diurnal patterns
continuity

Check timeseries continuity
cleanVarL

Clean a variable below a threshold
spectra

Ensemble spectra from semi-enclosed IRGA at Harwood forest
plotFingerprint

Plot a fingerprint graph
FREddyPro-package

\Sexpr[results=rd,stage=build]{tools:::Rd_package_title("#1")}FREddyProPost-Processing EddyPro Full Output File
fluxes

Fluxes from Harwood forest
ustarThreshold

Find the u* threshold
plotTimeseries

Plot a time series plot
plotWindrose

Plot a wind rose
rotateMatrix

Rotate a matrix
midpoints

Mid-point of a class
sdClean

Clean using standard deviation
percentNA

Percent of NA values
readFile

Read a file
buildTimestamp

Build a timestamp
readEddyPro

Read EddyPro full output
cleanFluxes

Cleaning and de-spiking fluxes
cleanVar

Clean a variable
cleanSecondVar

Clean a second variable
cleanVarG

Clean a variable above a threshold
calculateFootprint

Minimum argument footprint calculation
calculatePercentFootprint

Calculate Percent Footprint
addSiteName

Create an extra column in a data frame with the name of the site