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FRGEpistasis (version 1.8.0)

Epistasis Analysis for Quantitative Traits by Functional Regression Model

Description

A Tool for Epistasis Analysis Based on Functional Regression Model

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Version

Version

1.8.0

License

GPL-2

Maintainer

Futao Zhang

Last Published

February 15th, 2017

Functions in FRGEpistasis (1.8.0)

innerEpi

Epistasis Detection Inner one Chromosome
FRGEpistasis-package

Package of Epistasis Detection by Functional Regression Model
fourierExpansion

Fourier Expansion of Genotype
outerEpi

Epistasis Detection Outer Chromosomes
fRGInteraction

Interaction Test by Functional Regression Model
frgEpistasisTest

Epistasis Test by Functional Regression Model
fRGEpistasis

Genome Wide Epistasis Study by Functional Regress Model
outerSnpListInteraction

Pairwise Interaction Test Outer The SNP Lists
pCAInteraction

Epistasis Test by Principal Component Analysis
snpPairInteraction

SNP-SNP interaction
innerSnpListInteraction

Pairwise Interaction Test Inner The Same SNP List
rankTransPheno

Rank-Based Inverse Normal Transformation
pCAPiontwiseEpistasis

Epistasis Test by PCA Method and Piontwise Method
logTransPheno

logarithmic transformation
reduceGeno

Reduction Dimension of Genotype
pointwiseInteraction

Pointwise Interaction Test