Fragment Analysis And Capillary Sequencing Tool Kit

Functions to import Applied Biosystems data files and process them in a highly flexible and interfaced framework. RT-MLPA application (gene-expression profiling and classification) is described in Mareschal, Ruminy et al (2015) doi:10.1016/j.jmoldx.2015.01.007. Gene-fusion detection is described in Mareschal, Palau et al (under review). Examples are provided for genotyping applications as well.

Availability

A short presentation of the project can be found on my personnal website.

• WWW : https://bioinformatics.ovsa.fr/FSAtools

Release sources and builds can be found in the CRAN repository :

• WWW : https://CRAN.R-project.org/package=FSAtools
• R : install.packages("FSAtools")

Development sources are freely available on GitHub :

• WWW : https://github.com/maressyl/R.FSAtools
• GIT : https://github.com/maressyl/R.FSAtools.git

All this material is freely distributed under the GNU Public License 3, shipped with sources and builds.

Support

Bugs, suggestions and help requests should be submitted using GitHub's Issues (see 'Availability').

Changelog

Release updates are tracked by the NEWS.Rd file, browsable on the CRAN repository (see 'Availability').

Individual commits can be followed on GitHub (see 'Availability').

Credits

Sylvain Mareschal <mareschal@ovsa.fr>