FastHCS (version 0.0.7)

DnaAlteration: Cytosine methylation beta values for a sample of 198 non-pathological human tissue specimens.

Description

A data frame with the subset of the 'Dna Alteration' data set corresponding to the sample of 'blood' and 'non-blood, non placenta' tissues.

Usage

data(DnaAlteration)

Format

Labels

Observations with label "0" correspond to the subset of 'blood' tissues.

Column 2--1414

Cytosine methylation beta values collected at 1413 autosomal CpG loci.

Examples

# NOT RUN {
data(DnaAlteration)
alpha<-0.5
Q<-15
p<-ncol(DnaAlteration[,-1])
ns<-FHCSnumStarts(q=Q,eps=(1-alpha)*4/5)
RunExample<-FALSE
if(RunExample){
	Fit<-FastHCS(x=DnaAlteration[,-1],q=Q,nSamp=ns,seed=0)
	colvec<-rep("orange",nrow(DnaAlteration))
	colvec[DnaAlteration[,1]==1]<-"blue"
	plot(Fit,col=colvec,pch=16)
}

# }