intestine

This dataset contains gene expression values, i. e. transcript counts, of 278 intestinal epithelial cells, and additional information on different cell types in this sample.

datasets

Application of 'FateID' allows computation and visualization of cell fate bias for multi-lineage single cell transcriptome data. Herman, J.S., Sagar, Gr<c3><bc>n D. (2018) <DOI:10.1038/nmeth.4662>.

Dominic Grc3<bc>n

FateID

Quantification of Fate Bias in Multipotent Progenitors

intestine function

A list of the following 5 components:<dl class="dl-horizontal">
 <dt>x</dt><dd>data frame with genes as rows and cells as columns. This reduced data frame only contains expression of the most variable genes.</dd>
 <dt>y</dt><dd>vector containing a clustering partition of the 278 cells into different cell types</dd>
 <dt>v</dt><dd>data frame with genes as rows and cells as columns. This data frame contains expression of all genes.</dd>
 <dt>fcol</dt><dd>vector containing colour values for all clusters in <code>y</code></dd>
</dl>

Format

Single-cell transcriptome data of intestinal epithelial cells — intestine

A list of the following 5 components:<dl class='dl-horizontal'>
 <dt>x</dt><dd>data frame with genes as rows and cells as columns. This reduced data frame only contains expression of the most variable genes.</dd>
 <dt>y</dt><dd>vector containing a clustering partition of the 278 cells into different cell types</dd>
 <dt>v</dt><dd>data frame with genes as rows and cells as columns. This data frame contains expression of all genes.</dd>
 <dt>fcol</dt><dd>vector containing colour values for all clusters in <code>y</code></dd>
</dl>

intestine: Single-cell transcriptome data of intestinal epithelial cells

Description

Usage

Arguments

Value

Format

References