FindMyFriends (version 1.2.2)

internal-mergePangenomes: Merge information from two pangenomes

Description

This method is for internal use only and should not be called directly. Use addGenomes instead. It is required for subclasses of pgVirtual.

Usage

mergePangenomes(pg1, pg2, ...)
"mergePangenomes"(pg1, pg2, geneGrouping, groupInfo, ...)
"mergePangenomes"(pg1, pg2, geneGrouping, groupInfo, ...)
"mergePangenomes"(pg1, pg2, geneGrouping, groupInfo)
"mergePangenomes"(pg1, pg2, geneGrouping, groupInfo, ...)
"mergePangenomes"(pg1, pg2, geneGrouping, groupInfo)
"mergePangenomes"(pg1, pg2, geneGrouping, groupInfo)

Arguments

pg1

A pgVirtual subclass

pg2

An object of the same class as pg1

...

Parameters to be passed on

geneGrouping

The grouping of the genees in the merged pangenome. Equivalent to calling seqToGeneGroup on the new object

groupInfo

The metadata on the gene groups in the merged pangenome. Equivalent to calling groupInfo on the new object

Value

An object of the same class as pg1