pgLMLoc-class


This class extends <code>pgLM</code> by subclassing 
<code>pgInMemLoc</code> and thus adding gene location information
to each gene. See the respective superclasses for more information.


A framework for doing microbial comparative genomics in R.
The main purpose of the package is assisting in the creation of
pangenome matrices where genes from related organisms are
grouped by similarity, as well as the analysis of these data.
FindMyFriends provides many novel approaches to doing pangenome
analysis and supports a gene grouping algorithm that scales
linearly, thus making the creation of huge pangenomes feasible.

Thomas Pedersen

FindMyFriends

Microbial Comparative Genomics in R

pgLMLoc-class function

This class extends <code><linkS4class>pgLM</linkS4class></code> by subclassing 
<code><linkS4class>pgInMemLoc</linkS4class></code> and thus adding gene location information
to each gene. See the respective superclasses for more information.

pgLMLoc-class: Class for reference based pangenome data with location information

Description

Arguments

See Also