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FinePop (version 1.1.1)

Fine-Scale Population Analysis

Description

Statistical tool set for population genetics. The package provides empirical Bayes estimator of Fst, Nei's Gst, and Weir & Cockerham's theta adapted for pairwise comparison. It also provides interfaces to read and manipulate 'GENEPOP' format data files.

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Install

install.packages('FinePop')

Monthly Downloads

260

Version

1.1.1

License

GPL (>= 2.0)

Maintainer

Reiichiro Nakamichi

Last Published

October 17th, 2016

Functions in FinePop (1.1.1)

EBFST

Empirical Bayes estimator of Fst.
FinePop-package

\Sexpr[results=rd,stage=build]{tools:::Rd_package_title("#1")}FinePopFine-Scale Population Analysis
data.JSM

An example dataset of GENEPOP format.
GstN

Nei's Gst.
read.genepop

Create a genetic data object of populations from a GENEPOP format file.
thetaWC.pair

Weir and Cockerham's theta adapted for pairwise Fst.
clip.genepop

Remove designated markers from a GENEPOP file.