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FinePop (version 1.3.0)

Fine-Scale Population Analysis

Description

Statistical tool set for population genetics. The package provides empirical Bayes estimator of Fst and other measures of genetic differentiation. It also provides interfaces to read and manipulate 'GENEPOP' format data files and allele/haplotype frequency format files.

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Version

Install

install.packages('FinePop')

Monthly Downloads

260

Version

1.3.0

License

GPL (>= 2.0)

Maintainer

Reiichiro Nakamichi

Last Published

February 10th, 2017

Functions in FinePop (1.3.0)

FinePop-package

FinePop
data.JSM

An example dataset of GENEPOP format and frequency format.
EBFST

Empirical Bayes estimator of Fst.
thetaWC.pair

Weir and Cockerham's theta adapted for pairwise Fst.
read.frequency

Create an allele (haplotype) frequency data object of populations from a frequency format file.
read.genepop

Create a genotype data object of populations from a GENEPOP format file.
EBDJ

Empirical Bayes estimator of Jost's D
GstN

Nei's Gst.
GstH

Hedrick's G'st
DJ

Jost's D
clip.genepop

Remove designated markers from a GENEPOP file.
GstNC

Nei and Chesser's Gst
EBGstH

Empirical Bayes estimator of Hedrick's G'st