jsmackerel: An example dataset of Japanese Spanich mackerel in GENEPOP and frequency format.

Description

An example of a genetic data for a Japanese Spanish mackerel population (Nakajima et al. 2014). It contains genotypic information of 5 microsatellite markers from 8 subpopulations of 715 individuals. GENEPOP format (Rousset 2008) text files are available. Name list of subpopulations also is attached.

Usage

data("jsmackerel")

Arguments

Format

$ MS.genepop: Genotypic information of 5 microsatellites in GENEPOP format text data. $ popname: Names of subpopulations.

References

Nakajima K et al. (2014) Genetic effects of marine stock enhancement: a case study based on the highly piscivorous Japanese Spanish mackerel. Canadian Journal of Fisheries and Aquatic Sciences, 71, 301-314. Kitada S, Kitakado T, Kishino H (2007) Empirical Bayes inference of pairwise FST and its distribution in the genome. Genetics, 177, 861-873. Rousset F (2008) Genepop'007: a complete reimplementation of the Genepop software for Windows and Linux. Mol. Ecol. Resources, 8, 103-106.

Examples

Run this code

# NOT RUN {
data(jsmackerel)
jsm.ms.genepop.file <- tempfile()
jsm.popname.file <- tempfile()
cat(jsmackerel$MS.genepop, file=jsm.ms.genepop.file, sep="\n")
cat(jsmackerel$popname, file=jsm.popname.file, sep=" ")

# See two text files in temporary directory.
#  jsm.ms.genepop.file  : GENEPOP format file of microsatellite data
#  jsm.popname.file     : plain text file of subpopulation names
# }