SMR.raw

The dataset containing raw data of standard metabolic rate measurements obtained by using the function <code>import.meas</code>)

datasets

Calculates metabolic rate of fish and other aquatic organisms measured using
an intermittent-flow respirometry approach. The tool is used to run a set of graphical
QC tests of raw respirometry data, correct it for background respiration and chamber
effect, filter and extract target values of absolute and mass-specific metabolic rate.
Experimental design should include background respiration tests and measuring of one
or more metabolic rate traits. The R package is ideally integrated with the pump
controller 'PumpResp' and the DO meter 'SensResp' (open-source hardware by FishResp).
Raw respirometry data can be also imported from 'AquaResp' (free software), 'AutoResp'
('LoligoSystems'), 'OxyView' ('PreSens'), 'Pyro Oxygen Logger' ('PyroScience') and
'Q-box Aqua' ('QubitSystems'). More information about the R package 'FishResp'is
available in the publication by Morozov et al. (2019) <doi:10.1093/conphys/coz003>.

Sergey Morozov

FishResp

Analytical Tool for Aquatic Respirometry

Scott McCairns

Juha Merila

Federico Calboli

Jenni Prokkola

Stephen White

Daniel Montgomery

Laura Almodovar-Acevedo

Niclas Kolm

Alexander Kotrschal

Erik Gill

SMR.raw function

A data frame with 19200 rows and 16 variables:<dl>
 <dt>Date.Time</dt>
<dd>date and time (yyyy/mm/dd hh:mm:ss)</dd> <dt>Phase</dt>
<dd>the type of phase and an ordinal number of measurements (e.g. M1, F3)</dd> <dt>Temp.1</dt>
<dd>temperature at each second (\(C^{o}\))</dd> <dt>Ox.1</dt>
<dd>actual level of dissolved oxygen at each second (mgO2/L)</dd> <dt>Real.Time</dt>
<dd>time (hh:mm:ss)</dd> <dt>Date</dt>
<dd>date (yyyy/mm/dd)</dd> <dt>Time</dt>
<dd>ordinal number of seconds in each measurement phase (1-1200)</dd> <dt>Start.Meas</dt>
<dd>the first second of a measurement phase (hh:mm:ss)</dd> <dt>End.Meas</dt>
<dd>the last second of a measurement phase (hh:mm:ss)</dd> <dt>Total.Phases</dt>
<dd>the total number of measurement phases (constant value)</dd> <dt>Ox.2</dt>
<dd>see Ox.1</dd> <dt>Ox.3</dt>
<dd>see Ox.1</dd> <dt>Ox.4</dt>
<dd>see Ox.1</dd> <dt>Temp.2</dt>
<dd>see Temp.1</dd> <dt>Temp.3</dt>
<dd>see Temp.1</dd> <dt>Temp.4</dt>
<dd>see Temp.1</dd>
</dl>

Format

Standard Metabolic Rate: Raw Data — SMR.raw

A data frame with 19200 rows and 16 variables:<dl>
 <dt>Date.Time</dt>
<dd>date and time (yyyy/mm/dd hh:mm:ss)</dd>

 <dt>Phase</dt>
<dd>the type of phase and an ordinal number of measurements (e.g. M1, F3)</dd>

 <dt>Temp.1</dt>
<dd>temperature at each second (\(C^{o}\))</dd>

 <dt>Ox.1</dt>
<dd>actual level of dissolved oxygen at each second (mgO2/L)</dd>

 <dt>Real.Time</dt>
<dd>time (hh:mm:ss)</dd>

 <dt>Date</dt>
<dd>date (yyyy/mm/dd)</dd>

 <dt>Time</dt>
<dd>ordinal number of seconds in each measurement phase (1-1200)</dd>

 <dt>Start.Meas</dt>
<dd>the first second of a measurement phase (hh:mm:ss)</dd>

 <dt>End.Meas</dt>
<dd>the last second of a measurement phase (hh:mm:ss)</dd>

 <dt>Total.Phases</dt>
<dd>the total number of measurement phases (constant value)</dd>

 <dt>Ox.2</dt>
<dd>see Ox.1</dd>

 <dt>Ox.3</dt>
<dd>see Ox.1</dd>

 <dt>Ox.4</dt>
<dd>see Ox.1</dd>

 <dt>Temp.2</dt>
<dd>see Temp.1</dd>

 <dt>Temp.3</dt>
<dd>see Temp.1</dd>

 <dt>Temp.4</dt>
<dd>see Temp.1</dd>


</dl>

Standard Metabolic Rate: Raw Data

SMR.raw: Standard Metabolic Rate: Raw Data

Description

Usage

Arguments

Format