Learn R Programming

FixSeqMTP (version 0.1.2)

Fixed Sequence Multiple Testing Procedures

Description

Several generalized / directional Fixed Sequence Multiple Testing Procedures (FSMTPs) are developed for testing a sequence of pre-ordered hypotheses while controlling the FWER, FDR and Directional Error (mdFWER). All three FWER controlling generalized FSMTPs are designed under arbitrary dependence, which allow any number of acceptances. Two FDR controlling generalized FSMTPs are respectively designed under arbitrary dependence and independence, which allow more but a given number of acceptances. Two mdFWER controlling directional FSMTPs are respectively designed under arbitrary dependence and independence, which can also make directional decisions based on the signs of the test statistics. The main functions for each proposed generalized / directional FSMTPs are designed to calculate adjusted p-values and critical values, respectively. For users' convenience, the functions also provide the output option for printing decision rules.

Copy Link

Version

Install

install.packages('FixSeqMTP')

Monthly Downloads

157

Version

0.1.2

License

GPL (>= 2)

Maintainer

Yalin Zhu yalinzhuregeneroncom

Last Published

January 5th, 2017

Functions in FixSeqMTP (0.1.2)

FSFDR.indept.cv

Critical Values for Fixed Sequence FDR Controlling Procedure under Independence
FSFWER.arbidept.p.adjust

Adjusted P-values for Fixed Sequence FWER Controlling Procedures under Arbitrary Dependence
FSFWER.arbidept.cv

Critical Values for Fixed Sequence FWER Controlling Procedures under Arbitrary Dependence
FSFDR.arbidept.cv

Critical Values for Fixed Sequence FDR Controlling Procedure under Arbitrary Dependence
FSFDR.arbidept.p.adjust

Adjusted P-values for Fixed Sequence FDR Controlling Procedure under Arbitrary Dependence
FSmdFWER.arbidept.cv

Critical values for Fixed Sequence mdFWER Controlling Procedure under Arbitrary Dependence Along with Directional Decisions Regarding Parameters of Interest
bisection.FDR

Bisection algorithm (FDR)
bisection.FWER

Bisection algorithm (FWER)
FSFDR.indept.p.adjust

Adjusted P-values for Fixed Sequence FDR Controlling Procedure under Independence
FixSeqMTP

FixSeqMTP : Tools for Fixed Sequence Multiple Testing Procedures
optim.arbidept.adjp

Objective function to be optimized (4)
optim.both.adjp

Objective function to be optimized (3)
optim.indept.adjp

Objective function to be optimized (5)
FSmdFWER.arbidept.p.adjust

Adjusted P-values for Fixed Sequence mdFWER Controlling Procedure under Arbitrary Dependence Along with Directional Decisions Regarding Parameters of Interest
FSmdFWER.indept.p.adjust

Adjusted P-values for Fixed Sequence mdFWER Controlling Procedure under Independence Along with Directional Decisions Regarding Parameters of Interest
optim.accept.adjp

Objective function to be optimized (2)
optim.reject.adjp

Objective function to be optimized (1)
FSmdFWER.indept.cv

Critical values for Fixed Sequence mdFWER Controlling Procedure under Independence Along with Directional Decisions Regarding Parameters of Interest