A dataset containing CellPhoneDB results of 11 gene pairs in 10 combinations of 2 cell types. Raw data obtained in 10.1016/j.ccell.2021.02.015. Script used to generate this dataset from the raw data is available in the FlexDotPlot_cellphoneDB_dataset vignette.
data(CellphoneDB_example_data)A data frame with 55 rows and 11 variables
pair. Gene pair
clusters. Cell type pair
pvalue. pvalue from CellPhoneDB
mean. Log2 mean (gene pair expressions) from CellPhoneDB
mean1. Average expression of the first gene in the first cell type
mean2. Average expression of the second gene in the second cell type
pct1. Percentage of cells from the first cell type expressing the first gene
pct2. Percentage of cells from the second cell type expressing the second gene
log2mean1. mean1 with log2 transformation
log2mean2. mean2 with log2 transformation
log10pval. pvalue with -log10 transformation
10.1016/j.ccell.2021.02.015