homo.panel

different dna sizes usually obtained by using overview and locator functions

panel

window in base pairs indicating when should be considered the same panel allele

window

This functions takes a list of positions, heights and weights for ssr calls of a certain plant and uses panel information and a window to homogenize the weights of base pairs to the panel calls provided.

Performs fragment analysis using genetic data coming from capillary electrophoresis machines. These are files with FSA extension which stands for FASTA-type file and contains DNA fragment intensities read by machinery. In addition to visualization, it performs automatic scoring of SSRs (Sample Sequence Repeats; a type of genetic marker very common across the genome) and other type of PCR markers (standing for Polymerase Chain Reaction) in biparental populations such as F1, F2, BC (backcross), and diversity panels (collection of genetic diversity).

homo.panel: complementary tools

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Examples