FreeSortR (version 1.3)

ConsensusPartition: Consensus of Partitions

Description

Returns the consensus partition among a set of partitions

Usage

ConsensusPartition(Part, ngroups = 0, type = "cutree", optim = FALSE, 
            maxiter = 100, plotDendrogram = FALSE, verbose = FALSE)

Arguments

Part

Object of class SortingPartition

ngroups

Number of groups of the consensus (or ngroups=0 for optimal choice)

type

Method (type="cutree" or type="fusion" or type="medoid")

optim

Optimisation of the consensus (default is optim=FALSE)

maxiter

Maximum number of iterations for fusion algorithm

plotDendrogram

Plot of the dendrogram (if type="cutree" initialisation)

verbose

Print the initialisation results

Value

List of following components:

Consensus

Consensus

Crit

Criterion for consensus

Details

The criterion for optimal consensus is the mean adjusted Rand Index between the consensus and the partitions given by the subjects.

If ngroups=0, consensus is computed between 2 and nstimuli-1 and the best consensus is returned.

For type="cutree", the initialisation step is based on cutting the tree generated by clustering the stimuli. For type="fusion", the initialisation step is based on the fusion algorithm. In this case, results are more accurate but the algorithm might be time consuming. For type="medoid", the consensus is the closest partition to all the partitions given by subjects.

For optim=TRUE, a transfer step is performed after the initialisation step.

References

Krieger & Green (1999) J. of Classification, 16:63-89

Examples

# NOT RUN {
  data(AromaSort)
  Aroma<-SortingPartition(AromaSort)
  res<-ConsensusPartition(Aroma,ngroups=0,type="cutree")
  res
  ##res<-ConsensusPartition(Aroma,ngroups=0,type="fusion",optim=TRUE)
  ##res
  ##res<-ConsensusPartition(Aroma,type="medoid")
  ##res
  
# }