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FunciSNP (version 1.14.0)
Integrating Functional Non-coding Datasets with Genetic Association Studies to Identify Candidate Regulatory SNPs
Description
FunciSNP integrates information from GWAS, 1000genomes and chromatin feature to identify functional SNP in coding or non-coding regions.
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Version
1.14.0
1.12.0
1.10.0
1.8.0
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Version
1.14.0
License
GPL-3
Maintainer
Simon G Coetzee
Last Published
January 19th, 2013
Functions in FunciSNP (1.14.0)
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TagSNP-class
Class
"TagSNP"
FunciSNPbed
Creates a BED file to view YAFSNPs in your favorite genome browser
FunciSNPplot
FunciSNPplot to visualize YAFSNP summary.
FunciSNPidsFromSummary
coming soon.
FunciSNP-package
Functional Identification of SNPs with Phenotype by Coincidence with Chromatin Biofeatures
getFSNPs
Functional Identification of SNPs with Phenotype by Coincidence with Chromatin Biofeatures
FunciSNPAnnotateSummary
Genomic Annotation of YAFSNPs.
TSList-class
Class
"TSList"
FunciSNPtable
Will output a summary report from FunciSNP at specified Rsquare cut-offs.
CorrelatedSNPs-class
Class
"CorrelatedSNPs"
FunciSNPsummaryOverlaps
Summarizes FunciSNP results by overlaps