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FunctanSNP (version 0.1.0)

Functional Analysis (with Interactions) for Dense SNP Data

Description

An implementation of revised functional regression models for multiple genetic variation data, such as single nucleotide polymorphism (SNP) data, which provides revised functional linear regression models, partially functional interaction regression analysis with penalty-based techniques and corresponding drawing functions, etc.(Ruzong Fan, Yifan Wang, James L. Mills, Alexander F. Wilson, Joan E. Bailey-Wilson, and Momiao Xiong (2013) ).

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Version

Install

install.packages('FunctanSNP')

Monthly Downloads

153

Version

0.1.0

License

GPL (>= 2)

Maintainer

Rui Ren

Last Published

October 18th, 2022

Functions in FunctanSNP (0.1.0)

SNPinter

Revised partially functional interaction regression analysis for the sequence (genotypes) data
plotRawdata

Visualization of the sequence (genotypes) data
plotSNPreg

Plot coefficient functions and residuals from an SNPlm or SNPinter object
plotGVF

Plot the genetic variant function
predictSNPreg

Make predictions from an SNPlm or SNPinter object
coefSNPreg

Extract coefficients from an SNPlm or SNPinter object
SNPgvf

Transform the sequence (genotypes) data into the genetic variant function
SNPcvinter

Cross-validation for SNPinter
SNPlm

Revised functional linear regression analysis for the sequence (genotypes) data
simData2

Generate simulated data for SNPinter and SNPcvinter
simX

Generate the sequence (genotypes) data containing only 0, 1 and 2
simData1

Generate simulated data for SNPlm