GCAI.bias (version 1.0)

counts.preprocess: Data Object Generation

Description

To extract position and count information from train.dat.counts or test.dat.counts

Usage

counts.preprocess(mat.counts)

Arguments

mat.counts

a dataframe of train.dat.counts or test.dat.counts

Value

counts.preprocess return a list containing components:

counts

a matrix of counts

pos

a matrix of positions

References

Cai G, RNA-SEQUENCING APPLICATIONS: GENE EXPRESSION QUANTIFICATION AND METHYLATOR PHENOTYPE IDENTIFICATION, Ph.D. Thesis, 2013

See Also

train.dat.counts,test.dat.counts

Examples

data(train.dat.counts)
obj.train<-counts.preprocess(train.dat.counts)

data(test.dat.counts)
obj.test<-counts.preprocess(test.dat.counts)