gen.simuSampleFreq

Returns the number of alleles transmitted to specified probands from ancestors

datagen

Genealogical data analysis including descriptive statistics (e.g., kinship and inbreeding coefficients) and gene-dropping simulations. See: "GENLIB: an R package for the analysis of genealogical data" Gauvin et al. (2015) <doi:10.1186/s12859-015-0581-5>.

Marie-Helene Roy-Gagnon

GENLIB

Genealogical Data Analysis

Louis Houde

Jean-Francois Lefebvre

Valery Roy-Lagace

Sebastien Lemieux

Michael J. Fromberger

Jarno van der Kolk

Mohan Rakesh

gen.simuSampleFreq function

<dl><dt>gen</dt>
<dd>An object of class GLgen obtained with gen.genealogy, gen.lineages or gen.branching. Required.</dd><dt>pro</dt>
<dd>Vector of proband id numbers to be included. Required.</dd><dt>ancestors</dt>
<dd>Vector of ancestors id numbers to be included. Required.</dd><dt>stateAncestors</dt>
<dd>Required vector indicating, for each ancestor in ancestors, the genotype state:
0 = no disease allele present
1 = 1 disease allele present
2 = 2 disease alleles present</dd><dt>simulNo</dt>
<dd>Number of simulations to perform. Default is 5000.</dd></dl>

Arguments

Gene dropping simulations - Frequencies — gen.simuSampleFreq

<dl>

<dt>gen</dt>
<dd>An object of class GLgen obtained with gen.genealogy, gen.lineages or gen.branching. Required.</dd>

<dt>pro</dt>
<dd>Vector of proband id numbers to be included. Required.</dd>

<dt>ancestors</dt>
<dd>Vector of ancestors id numbers to be included. Required.</dd>

<dt>stateAncestors</dt>
<dd>Required vector indicating, for each ancestor in ancestors, the genotype state:
0 = no disease allele present
1 = 1 disease allele present
2 = 2 disease alleles present</dd>

<dt>simulNo</dt>
<dd>Number of simulations to perform. Default is 5000.</dd>

</dl>

Gene dropping simulations - Frequencies

gen.simuSampleFreq: Gene dropping simulations - Frequencies

Description

Usage

Value

Arguments

See Also

Examples