GEOsearch (version 1.0.0)

GEOSearchTerm: GEOSearchTerm

Description

Perform searching in NCBI GEO database.

Usage

GEOSearchTerm(termlist)

Arguments

termlist
A character vector of terms to be searched in NCBI GEO. Typically the direct output of function "termalias"

Value

A data frame containing the search results returned from NCBI GEO. First column: GEO Series Accesion Number; Second column: Organism; Third column: Title; Fourth column: Type of experiment; Fifth column: Experiment Platform Sixth column: Number of Samples; Seventh column: URL for SRX download; Eighth column: Description Ninth column: Corresponding search term.

Details

Search the terms one by one in NCBI GEO database and return an integrated table of search results. The returned results should contain exactly the same information as the results returned by directly searching in http://www.ncbi.nlm.nih.gov/geo/.

Examples

Run this code
GEOSearchTerm("Oct4 RNA-seq")

Run the code above in your browser using DataCamp Workspace