Creates report from milestone data produced by g.part4. Not intended for direct use by package user
g.report.part4(datadir=c(),metadatadir=c(),loglocation = c(),f0=c(),
f1=c(),storefolderstructure=TRUE, data_cleaning_file=c(), sleepwindowType = "SPT")see g.part4
see g.part4
see g.part4
see g.part4
see g.part4
see g.part4
see g.part4
see g.part4
Function does not produce data, but only writes reports in csv format and a visual report in pdf.
The following files are stored in the root of the results folder: part4_nightsummary_sleep_cleaned.csv part4_summary_sleep_cleaned.csv
The following files are stored in the folder results/QC: part4_nightsummary_sleep_full.csv part4_summary_sleep_full.csv
If a sleeplog is used *_full.csv as stored in the QC folder includes estimates for all nights in the data, and *_cleaned.csv in the results folder includes estimates for all nights in the data excluding the nights that did not had a sleeplog entry or had no valid accelerometer data.
If a sleep log is not used then * _cleaned.csv includes the nights that are in *_full.csv excluding the nights with insufficient data.
If you have a study where the sleeplog was available for a subset of the participants, but you want to include all individuals in your analysis, then use the *_full.csv output and clean the night level data yourself by excluding rows with cleaningcode > 1 which are the cases where no or invalid accelerometer data was present.
The above means that for studies with missing sleeplog entries for some individuals and some nights using the *_full.csv output and excluding rows (nights) with cleaningcode > 1 will lead to the same as * _cleaned.csv plus sleep estimates for the nights with missing sleeplog, providing that there was enough accelerometer data for those nights.
In other words, *_cleaned.csv is perfect if you only want to rely on nights with a sleeplog or if you do not use a sleeplog at all. For all other scenarios We advise using the *_full.csv report and to clean it yourself.
See package vignette sections "Sleep analysis" and "Output part 4" for a more elaborative description of the sleep analysis and reporting.