g.analyse.perfile: Function supports g.analyse. Not intended for direct use by user.

Description

Generates recording specific analyses and fills corresponding output matrix, g.analyse.

Usage

g.analyse.perfile(ID, fname, deviceSerialNumber,
  sensor.location, startt, I, LC2, LD, dcomplscore,
  LMp, LWp, C, lookat, AveAccAve24hr, 
  colnames_to_lookat, QUAN,  ML5AD,
  ML5AD_names, igfullr, igfullr_names,
  daysummary, ds_names, includedaycrit, strategy, hrs.del.start,
  hrs.del.end, maxdur, windowsizes, idloc, snloc, wdayname, doquan,
  qlevels_names, doiglevels, tooshort, InterdailyStability, 
  IntradailyVariability,
  IVIS_windowsize_minutes, qwindow, longitudinal_axis_id, cosinor_coef)

Value

filesummary: summary for the file that was analysed
daysummary: Summary per day for the file that was analysed

Arguments

ID: Person Identification number, this can be numeric or character
fname: see g.analyse.perday
deviceSerialNumber: As produced by g.extractheadervars
sensor.location: as produced by g.extractheadervars
startt: First timestamp in metalong
I: output g.inspectfile
LC2: see g.impute
LD: length data in minutes
dcomplscore: see g.impute
LMp: length measurement based on study protocol (minutes)
LWp: length of sensor worn based on study protocol (minutes)
C: output g.calibrate
lookat: indices of metashort column to analyse
AveAccAve24hr: Average acceleration in an average 24 hour cycle
colnames_to_lookat: Names of columns to look at, corresponding to argurment lookat
QUAN: Results quantile analysis on the average day produced by g.analyse.avday
ML5AD: Results ML5 analyses on the average day produced by g.analyse.avday
ML5AD_names: Columns names corresponding to ML5AD
igfullr: Results intensity gradient (ig) analysis on the average day produced by g.analyse.avday
igfullr_names: Columns names corresponding to igfullr
daysummary: object produced by g.analyse.perday
ds_names: column names corresponding to daysummary
includedaycrit: see g.analyse
strategy: see g.analyse
hrs.del.start: see g.analyse
hrs.del.end: see g.analyse
maxdur: see g.analyse
windowsizes: see g.getmeta
idloc: see g.analyse
snloc: see g.analyse
wdayname: character with weekdayname
doquan: Boolean whether quantile analysis should be done
qlevels_names: object produced by g.analyse.avday
doiglevels: Boolean to indicate whether iglevels should be calculated
tooshort: 0 (file not too short) or 1 (file too short)
InterdailyStability: see g.IVIS
IntradailyVariability: see g.IVIS
IVIS_windowsize_minutes: see g.IVIS
qwindow: see g.analyse
longitudinal_axis_id: Index of axis for which the angle correlates most strongly across 24 hoursas calculated inside g.analyse. For hip worn accelerometer this helps to check which axis was the veritcal axis. The estimate may not be informative for other attachment locations.
cosinor_coef: output from cosinorAnlayses passed on to be included in file summary

Author

Vincent T van Hees <v.vanhees@accelting.com>