applyCosinorAnalyses

Wrapper function around cosinorAnalyses that first prepares the time series
 before applying the cosinorAnlayses

A tool to process and analyse data collected with wearable raw acceleration sensors as described in Migueles and colleagues (JMPB 2019), and van Hees and colleagues (JApplPhysiol 2014; PLoSONE 2015). The package has been developed and tested for binary data from 'GENEActiv' <https://activinsights.com/>, binary (.gt3x) and .csv-export data from 'Actigraph' <https://theactigraph.com> devices, and binary (.cwa) and .csv-export data from 'Axivity' <https://axivity.com>. These devices are currently widely used in research on human daily physical activity. Further, the package can handle accelerometer data file from any other sensor brand providing that the data is stored in csv format. Also the package allows for external function embedding.

Vincent T van Hees

GGIR

Raw Accelerometer Data Analysis

Jairo H Migueles

Severine Sabia

Matthew R Patterson

Zhou Fang

Joe Heywood

Joan Capdevila Pujol

Lena Kushleyeva

Mathilde Chen

Manasa Yerramalla

Patrick Bos

Taren Sanders

Chenxuan Zhao

Gaia Segantin

Medical Research Council UK 

Accelting 

French National Research Agency 

applyCosinorAnalyses function

<dl> <dt>ts</dt>
<dd>Data.frame with timestamps and acceleration metric.</dd> <dt>qcheck</dt>
<dd>Vector of equal length as number of rows in ts with value 1 for invalid
 timestamps, 0 otherwise.</dd> <dt>midnightsi</dt>
<dd>Indices for midnights in the time series</dd> <dt>epochsizes</dt>
<dd>Epoch size for ts and qcheck respectively</dd></dl>

Arguments

Vincent T van Hees &lt;v.vanhees@accelting.com&gt;

Author

Apply Cosinor Analyses to time series — applyCosinorAnalyses

<dl>

 <dt>ts</dt>
<dd>Data.frame with timestamps and acceleration metric.</dd>

 <dt>qcheck</dt>
<dd>Vector of equal length as number of rows in ts with value 1 for invalid
 timestamps, 0 otherwise.</dd>

 <dt>midnightsi</dt>
<dd>Indices for midnights in the time series</dd>

 <dt>epochsizes</dt>
<dd>Epoch size for ts and qcheck respectively</dd>

</dl>

Apply Cosinor Analyses to time series

applyCosinorAnalyses: Apply Cosinor Analyses to time series

Description

Usage

Arguments

Author