GGtools (version 5.8.0)

gwSnpTests: execute a series of tests for association between genotype and expression

Description

execute a series of tests for association between genotype and expression

Usage

gwSnpTests(sym, sms, ...)
topSnps(x, n=10)

Arguments

sym

instance of probeId or genesym

sms

instance of smlSet-class

x

instance of gwSnpScreenResult

n

integer, number of test results to be reported, sorted decreasing from the most significant

...

not used

Value

an instance of the gwSnpScreenResult class, to be examined by topSnps

Details

The plot method for gwSnpScreenResult instances takes a second argument, the name of a Bioconductor SNPlocs.* package.

Examples

s20 = getSS("GGtools", "20")
t1 = gwSnpTests(genesym("CPNE1")~male, s20)
topSnps(t1)
## Not run: 
# plot(t1, snplocsDefault())
# ## End(Not run)