GINAX (version 0.1.0)

Performs Genome-Wide Iterative Fine-Mapping for Non-Gaussian Data using GINA-X

Description

Implements GINA-X, a genome-wide iterative fine-mapping method designed for non-Gaussian traits. It supports the identification of credible sets of genetic variants.

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Version

Install

install.packages('GINAX')

Monthly Downloads

116

Version

0.1.0

License

GPL-3

Maintainer

Shuangshuang Xu

Last Published

October 14th, 2025

Functions in GINAX (0.1.0)

poisson_PQL

PQL function for count data

log_marginal_likelihood_null

likelihood function for null

GINAX

Performs GINA-X as described in the manuscript, Xu, Williams, Tegge, and Ferreira Genome-wide iterative fine-mapping for non-Gaussian data, Nature Genetics, Submitted.

GINAX_terminal

GINAX function

Y_binary

Example Dataset3: Y_binary

SNPs

Example Dataset4: SNPs

kinship

Example Dataset1: kinship

PQL

PQL function

log_marginal_likelihood

likelihood function

binomial_PQL

PQL function for binary data

Y_poisson

Example Dataset2: Y_poisson