GOSim (version 1.10.0)

setEnrichmentFactors: Set the depth and densitiy enrichment factors for GO term similarity.

Description

Sets the depth and density enrichment factors for the enriched FuSSiMeg GO term similarity measure by Couto et al.

Usage

setEnrichmentFactors(alpha = 0.5, beta = 0.5)

Arguments

alpha

depth factor

beta

density factor

Value

none

References

F.Couto,M. Silva, P. Coutinho, Implementation of a Functional Semantic Similarity Measure between Gene-Products, DI/FCUL TR 03-29, Department of Informatics, University of Lisbon, 2003

See Also

getTermSim

Examples

#\donttest{ 
 	setEnrichmentFactors(alpha=0.1,beta=0.5)
 	getTermSim(c("GO:0006955","GO:0007584"),method="CoutoEnriched")
#}