GOexpress (version 1.6.1)

AlvMac_allgenes: Example of custom gene feature annotations.

Description

An example data.frame providing the identifier, name and description corresponding to Ensembl gene identifiers present in the AlvMac example ExpressionSet.

Usage

data("AlvMac_allgenes")

Value

A data frame detailing information about the 100 gene features present in the AlvMac example ExpressionSet:

• gene_id are Ensembl gene identifiers.
• external_gene_name contains the corresponding gene name.
• description contains the corresponding description.

Source

These annotations were obtained from the Ensembl BioMart server using the biomaRt package to access the Ensembl release 75 http://feb2014.archive.ensembl.org.

Details

This data-frame includes only Ensembl gene identifiers present in the AlvMac example ExpressionSet.

See the help page of the GO_analyse function for an example usage.

Examples

# Load the data
data(AlvMac_allgenes)

# Structure of the data
str(AlvMac_allgenes)

# First few rows
head(AlvMac_allgenes)