gs_kmeans

gs_limma

gs_limma_exp

gs_pca

tissue_example

<code>tissue_example</code> is a dataset extracted from Lukk et al, it contains a subset of 24 samples 
from more than 5000 in the original article. The gene expression in all the samples is measured using 
Affymetrix U133A array. 
The dataset is a list with 2 slots
<ol>
<li> <code>exp</code> - expression matrix;
	</li>
<li> <code>annot</code> - annotation data frame.
</li>
</ol>

data

A package to visualise Gene Ontology (GO) enrichment analysis
results on gene lists arising from different analyses such clustering or
PCA. The significant GO categories are visualised as word clouds that can
be combined with different plots summarising the underlying data.

Raivo Kolde

GOsummaries

Word cloud summaries of GO enrichment analysis

tissue_example function

<code>tissue_example</code> is a dataset extracted from Lukk et al, it contains a subset of 24 samples 
from more than 5000 in the original article. The gene expression in all the samples is measured using 
Affymetrix U133A array. 
The dataset is a list with 2 slots
<ol><li><code>exp</code>- expression matrix;</li><li><code>annot</code>- annotation data frame.</li></ol>

tissue_example: Example gene expression dataset

Description

Arguments

Details

References