GO4Organism

The function contains all the GO-terms associated with the genes of an organism and their levels.
 If "BP", "MF" or "CC" the GO-terms from the whole ontology is return and their levels.
 The supported organisms are "Homo sapiens / Human", "Rattus norvegicus / Rat", "Mus musculus / Mouse",
 "Danio rerio / Zebrafish", "Caenorhabditis elegans / Worm" ,"Arabidopsis thaliana / Cress",
 "Saccharomyces cerevisiae / Yeast", "Schizosaccharomyces pombe / Fission yeast",
 "Drosophila melanogaster / Fruit fly", "Escherichia coli / E.coli".

It provides an effective, efficient, and fast way to explore the Gene Ontology (GO).
Given a set of genes, the package contains functions to assess the GO and obtain the
terms associated with the genes and the levels of the GO terms. The package provides
functions for the three different GO ontology. We discussed the methods explicitly in
the following article <doi:10.1038/s41598-020-73326-3>.

Kalifa Manjang

GOxploreR

Structural Exploration of the Gene Ontology (GO) Knowledge Base

Frank Emmert-Streib

Shailesh Tripathi

Olli Yli-Harja

Matthias Dehmer

GO4Organism function

<dl><dt>organism</dt>
<dd>The organism supported by the package. Both the scientific / common name of the organism can be use</dd>
<dt>domain</dt>
<dd>The ontology of the GO-terms. The default is BP.</dd></dl>

Arguments

All gene association GO-terms for an organism — GO4Organism

<dl>

<dt>organism</dt>
<dd>The organism supported by the package. Both the scientific / common name of the organism can be use</dd>


<dt>domain</dt>
<dd>The ontology of the GO-terms. The default is BP.</dd>

</dl>

GO4Organism: All gene association GO-terms for an organism

Description

Usage

Value

Arguments

Examples