Level2LeafNodeMF

Derive all the leaf nodes from a GO MF level. The supported organism are "Homo sapiens / Human",
 "Rattus norvegicus / Rat", "Mus musculus / Mouse", "Danio rerio / Zebrafish", "Caenorhabditis elegans / Worm",
 "Arabidopsis thaliana / Cress", "Saccharomyces cerevisiae / Yeast", "Schizosaccharomyces pombe / Fission yeast",
 "Drosophila melanogaster / Fruit fly", "Escherichia coli / E.coli".

It provides an effective, efficient, and fast way to explore the Gene Ontology (GO).
Given a set of genes, the package contains functions to assess the GO and obtain the
terms associated with the genes and the levels of the GO terms. The package provides
functions for the three different GO ontology. We discussed the methods explicitly in
the following article <doi:10.1038/s41598-020-73326-3>.

Kalifa Manjang

GOxploreR

Structural Exploration of the Gene Ontology (GO) Knowledge Base

Frank Emmert-Streib

Shailesh Tripathi

Olli Yli-Harja

Matthias Dehmer

Level2LeafNodeMF function

<dl><dt>level</dt>
<dd>A numeric value for the GO-level</dd>
<dt>organism</dt>
<dd>An organism of interest from the list of supported organism. If NULL the results are from the general
GO-DAG (default).</dd></dl>

Arguments

GO molecular function (MF) level leaf nodes getter — Level2LeafNodeMF

<dl>

<dt>level</dt>
<dd>A numeric value for the GO-level</dd>


<dt>organism</dt>
<dd>An organism of interest from the list of supported organism. If NULL the results are from the general
GO-DAG (default).</dd>

</dl>

Level2LeafNodeMF: GO molecular function (MF) level leaf nodes getter

Description

Usage

Value

Arguments

Examples