Level2RegularNodeBP

The function retrieves the Regular nodes (RNs) from a GO-level. RNs are those GO-terms which have all their
 children term in the next GO-level (i.e level of parent + 1).
 If the optional parameter "organism" is missing then the result will be from the general GO tree instead of
 from a particular organism. The supported organisms are "Homo sapiens / Human", "Rattus norvegicus / Rat",
 "Mus musculus / Mouse", "Danio rerio / Zebrafish", "Caenorhabditis elegans / Worm" ,"Arabidopsis thaliana / Cress",
 "Saccharomyces cerevisiae / Yeast", "Schizosaccharomyces pombe / Fission yeast",
 "Drosophila melanogaster / Fruit fly", "Escherichia coli / E.coli".

It provides an effective, efficient, and fast way to explore the Gene Ontology (GO).
Given a set of genes, the package contains functions to assess the GO and obtain the
terms associated with the genes and the levels of the GO terms. The package provides
functions for the three different GO ontology. We discussed the methods explicitly in
the following article <doi:10.1038/s41598-020-73326-3>.

Kalifa Manjang

GOxploreR

Structural Exploration of the Gene Ontology (GO) Knowledge Base

Frank Emmert-Streib

Shailesh Tripathi

Olli Yli-Harja

Matthias Dehmer

Level2RegularNodeBP function

<dl><dt>level</dt>
<dd>A numeric value for the GO-level</dd>
<dt>organism</dt>
<dd>Organism of interest that is supported by the package</dd></dl>

Arguments

Regular nodes from a GO BP level — Level2RegularNodeBP

<dl>

<dt>level</dt>
<dd>A numeric value for the GO-level</dd>


<dt>organism</dt>
<dd>Organism of interest that is supported by the package</dd>

</dl>

Level2RegularNodeBP: Regular nodes from a GO BP level

Description

Usage

Value

Arguments

Examples