degreeDistMF

For a directed graph, the in-degree nodes are the nodes which have edges coming into them
 and the out-degree nodes are those which have edges going out of them. The degreeDistMF
 function shows the distribution of these degrees over a particular GO-level. A bar plot is obtain
 which shows how many nodes in the GO-level have a certain degree k.

It provides an effective, efficient, and fast way to explore the Gene Ontology (GO).
Given a set of genes, the package contains functions to assess the GO and obtain the
terms associated with the genes and the levels of the GO terms. The package provides
functions for the three different GO ontology. We discussed the methods explicitly in
the following article <doi:10.1038/s41598-020-73326-3>.

Kalifa Manjang

GOxploreR

Structural Exploration of the Gene Ontology (GO) Knowledge Base

Frank Emmert-Streib

Shailesh Tripathi

Olli Yli-Harja

Matthias Dehmer

degreeDistMF function

<dl><dt>level</dt>
<dd>A numeric value for the GO-level</dd></dl>

Arguments

Degree distribution of the GO molecular function (MF) terms on a GO-level — degreeDistMF

<dl>

<dt>level</dt>
<dd>A numeric value for the GO-level</dd>

</dl>

degreeDistMF: Degree distribution of the GO molecular function (MF) terms on a GO-level

Description

Usage

Value

Arguments

Examples