drawGraph

internal

It provides an effective, efficient, and fast way to explore the Gene Ontology (GO).
Given a set of genes, the package contains functions to assess the GO and obtain the
terms associated with the genes and the levels of the GO terms. The package provides
functions for the three different GO ontology. We discussed the methods explicitly in
the following article <doi:10.1038/s41598-020-73326-3>.

Kalifa Manjang

GOxploreR

Structural Exploration of the Gene Ontology (GO) Knowledge Base

Frank Emmert-Streib

Shailesh Tripathi

Olli Yli-Harja

Matthias Dehmer

drawGraph function

<dl><dt>Elegans</dt>
<dd>The igraph object</dd>
<dt>nodeinfo</dt>
<dd>The graph structure</dd>
<dt>title</dt>
<dd>The title of the plot</dd>
<dt>species</dt>
<dd>The organism of interest</dd>
<dt>ont</dt>
<dd>The ontology</dd>
<dt>org</dt>
<dd>Organism</dd></dl>

Arguments

Visualize GO DAG — drawGraph

<dl>

<dt>Elegans</dt>
<dd>The igraph object</dd>


<dt>nodeinfo</dt>
<dd>The graph structure</dd>


<dt>title</dt>
<dd>The title of the plot</dd>


<dt>species</dt>
<dd>The organism of interest</dd>


<dt>ont</dt>
<dd>The ontology</dd>


<dt>org</dt>
<dd>Organism</dd>

</dl>

Visualize GO DAG

drawGraph: Visualize GO DAG

Description

Usage

Value

Arguments