getColorVector

Factor modifying the opacity, valued between [0,1]. Default is set to 0.7.

opacity

By default set to FALSE; if TRUE, displays the color palette.

display

Function for obtaining a vector of RGB color codes where the colors are as distinctive as possible from each other. 
This function extracts colors from Paired (12 colors), Set2 (8 colors), and Dark2 (8 colors) palettes provided in
the RColorBrewer package. If you need more than 28 colors, please remember to add your own palette.

color

Implements a Gaussian process (GP)-based ranking method
which can be used to rank multiple time series according to their
temporal activity levels. An example is the case when expression
levels of all genes are measured over a time course and the main
concern is to identify the most active genes, i.e. genes which
show significant non-random variation in their expression levels.
This is achieved by computing Bayes factors for each time series
by comparing the marginal likelihoods under time-dependent and
time-independent GP models. Additional variance information from
pre-processing of the observations is incorporated into the GP
models, which makes the ranking more robust against model
overfitting. The package supports exporting the results to
'tigreBrowser' for visualisation, filtering or ranking.

getColorVector: Extracting distinctive colors from RColorBrewer package

Description

Usage

Arguments

Value

Examples