GPvecchia (version 0.1.7)

vecchia_specify: specify a general vecchia approximation

Description

specify the vecchia approximation for later use in likelihood evaluation or prediction. This function does not depend on parameter values, and only has to be run once before repeated likelihood evaluations.

Usage

vecchia_specify(
  locs,
  m = -1,
  ordering,
  cond.yz,
  locs.pred,
  ordering.pred,
  pred.cond,
  conditioning,
  mra.options = NULL,
  ic0 = FALSE,
  verbose = FALSE
)

Value

An object that specifies the vecchia approximation for later use in likelihood evaluation or prediction.

Arguments

locs

nxd matrix of observed locs

m

Number of nearby points to condition on

ordering

options are 'coord' or 'maxmin'

cond.yz

options are 'y', 'z', 'SGV', 'SGVT', 'RVP', 'LK', and 'zy'

locs.pred

nxd matrix of locations at which to make predictions

ordering.pred

options are 'obspred' or 'general'

pred.cond

prediction conditioning, options are 'general' or 'independent'

conditioning

conditioning on 'NN' (nearest neighbor) or 'firstm' (fixed set for low rank) or 'mra'

mra.options

Settings for number of levels and neighbors per level

ic0

Specifies if ic0 decomposition should be used as opposed to regular Cholesky

verbose

Provide more detail when using MRA calculations. Default is false.

Examples

locs=matrix(1:5,ncol=1); vecchia_specify(locs,m=2)