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GRANBase (version 1.6.8)

Creating Continuously Integrated Package Repositories from Manifests

Description

Repository based tools for department and analysis level reproducibility. 'GRANBase' allows creation of custom branched, continuous integration-ready R repositories, including incremental testing of only packages which have changed versions since the last repository build.

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Version

Install

install.packages('GRANBase')

Monthly Downloads

118

Version

1.6.8

License

Artistic-2.0

Issues

Pull Requests

Stars

Forks

Repository

https://github.com/gmbecker/gRAN

Maintainer

Gabriel Becker

Last Published

March 5th, 2018

Functions in GRANBase (1.6.8)

backup_archive Return path where packages are backed up by default when clearing the repo

Creates a href tag

Returns the difference between 2 data frames

install_packages,character,GRANRepository-method

install_packages method for GRANRepository objects

Backwards compatible load utility

location,GRANRepository-method

Retrieve the path to a GRAN (sub) repository

sortDelimitedString

Alphabetically sort delimited strings

staging Return the staging directory or the staging_logs to be used when building the repository. If the directory does not exist it will be created.

Log file location of a GRAN (sub) repository

GRANRepository-class

checkout_dir Return the directory that package sources will be checked-out into for use in the build process

Transform a GRANRepository object into a list

clear_temp_fils

Clear packages and temporary files from repo build process

Create a mailto tag for email IDs

email_notify Should emails be sent for build failure notifications?

addPkg,GRANRepository-method

Log file location of a GRAN (sub) repository

Wrapper for determinePkgURL

archivedir Return the full path to the archive directory for the final repository deployment.

Get or set individual parameters on a GRANRepository object

Create JSON representation of package information

Extract parameter object

Create HTML splash pages for packages

Create a GRANRepository object from a list

Create hex stickers for packages

Wrapper for dependsOnPkgs

available.packages

available.packages A generic for available.packages and a method for GRANRepository objects

email_options Email options for sending build failure notifications

buildBranchesInRepo

Build SCM Checkouts Into Repository Directory

repo_url Return the url that the repository will be served at. This is the web address corresponding to repository, suitable for calling contrib.url. e.g http://www.website.com/gran/current/

Constructs the gRAN build report URL

contrib.url A generic for contrib.url so that available.packages et al can interact with GRANRepository objects.

coverage_report_dir

coverage_report_dir Return the path where test coverage reports for packages will be deployed for use in the build report.

determinePkgURL

Generate package's external URL after validation info as data.frame

Send email notifications to maintainers whose builds failed

install_result_dir

install_result_dir Return the path where instal results for packages will be deployed for use in the build report.

dest_base Return the full path to the contrib directory for the final repository deployment.

pkg_doc_dir Return the path where test coverage reports for packages will be deployed for use in the build report.

repobase Generic accessor function to retreive the repo specific subdirectory within the base directory

Checks whether an email ID is valid

Read and summarize the NEWS files for packages at risk (updatable)

Get the OS Type

Creates a dataframe containing information regarding packages that had a failed status

Convert string to numeric representation

destination Return the full path to the contrib directory for the final repository deployment.

Wrapper for determinePkgURL. Deprecate due to performance issues.

Move older package sources to the Archive directory

Calculate and generate package code test coverage reports

RepoBuildParam-class

generateDescInfo

Converts a DESCRIPTION file to a data.frame

Backwards compatible save utility

Sends email notifications for a given manifest

notrack,GRANRepository-method

notrack Return the directory which stores retreived versions of non-GRAN packages for use in virtual repositories

Repository build results

Generate reverse dependency info as data.frame

Wrapper for sendmail, allows for multiple attachments to be sent

Converts delimited string to list

temporary library

Create Badges for build status

buildRiskReport

Build risk-assessment for proposed package updates

check_result_dir

check_result_dir Return the path where check results for packages will be deployed for use in the build report.