hg38_cytoband

This dataset contains the start and end positions (in base pairs) of cytogenetic bands (cytobands) for all 22 autosomes, as well as the X and Y chromosomes, based on the Human GRCh38 (hg38) genome assembly.

datasets

Improved version of 'GRIN' software that streamlines its use in practice to analyze genomic lesion data, accelerate its computing, and expand its analysis capabilities to answer additional scientific questions including a rigorous evaluation of the association of genomic lesions with RNA expression. Pounds, Stan, et al. (2013) <DOI:10.1093/bioinformatics/btt372>.

Abdelrahman Elsayed

GRIN2

Genomic Random Interval (GRIN)

Xueyuan Cao

Lakshmi Anuhya patibandla

Stanley Pounds

hg38_cytoband function

<div class="section" id="hg-cytoband">
<h3><code>hg38_cytoband</code></h3>
A data frame with 1,549 rows and 5 columns:<dl>
<dt>chrom</dt>
<dd>Chromosome name (1:22, X, Y).</dd><dt>chromStart</dt>
<dd>Start position of the cytoband in base pairs.</dd><dt>chromEnd</dt>
<dd>End position of the cytoband in base pairs.</dd><dt>name</dt>
<dd>Name of the cytoband (e.g., p11.1, q22.3).</dd><dt>gieStain</dt>
<dd>Staining pattern (e.g., gpos, gneg, acen) used for cytogenetic visualization.</dd>
</dl></div>

Format

GRCh38 Chromosome Cytobands — hg38_cytoband

<div class='section' id='hg-cytoband'>
<h3><code>hg38_cytoband</code></h3>


A data frame with 1,549 rows and 5 columns:<dl>
<dt>chrom</dt>
<dd>Chromosome name (1:22, X, Y).</dd>

<dt>chromStart</dt>
<dd>Start position of the cytoband in base pairs.</dd>

<dt>chromEnd</dt>
<dd>End position of the cytoband in base pairs.</dd>

<dt>name</dt>
<dd>Name of the cytoband (e.g., p11.1, q22.3).</dd>

<dt>gieStain</dt>
<dd>Staining pattern (e.g., gpos, gneg, acen) used for cytogenetic visualization.</dd>


</dl>

</div>

hg38_cytoband: GRCh38 Chromosome Cytobands

Description

Usage

Arguments

Format

`hg38_cytoband`