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GROAN (version 1.3.1)

GROAN.KI: Example data for pea KI lines

Description

This list contains all data required to run GROAN examples. It refers to a pea experiment with 103 lines coming from a biparental Kaspa x Isard cross.

Usage

GROAN.KI

Arguments

Format

A list with the following fields:

  • "GROAN.KI$yield": named array with 103 slots, containing data on grain yield [t/ha]

  • "GROAN.KI$SNPs": data frame with 103 rows and 647 variables. Each row is a pea KI line, each column a SNP marker. Values can either be 0, 1, or 2, representing the three possible genotypes (AA, Aa, and aa, respectively).

  • "GROAN.KI$kinship": square dataframe containing the realized kinships between all pairs of each of the 103 pea KI lines. Values were computed following the Astle & Balding metric. Higher values represent a higher degree of genetic similarity between lines. This metric mainly accounts for additive genetic contributions (as an alternative to dominant contributions).