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GSALightning (version 1.0.2)

Fast Permutation-based Gene Set Analysis

Description

GSALightning provides a fast implementation of permutation-based gene set analysis for two-sample problem. This package is particularly useful when testing simultaneously a large number of gene sets, or when a large number of permutations is necessary for more accurate p-values estimation.

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Version

Version

1.0.2

License

GPL (>=2)

Maintainer

Billy Heung Wing Chang

Last Published

February 15th, 2017

Functions in GSALightning (1.0.2)

GSALightning-package

\Sexpr[results=rd,stage=build]{tools:::Rd_package_title("#1")}GSALightningFast Permutation-based Gene Set Analysis
GSALight

Fast Permutation-based Gene Set Analysis
permTestLight

Fast Single-Gene Permutation Test
sampleInfo

Sample Information for the Breast Cancer Data from The Cancer Genome Atlas (TCGA)
targetGenes

Target Genes of Distal Regulatory Elements
expression

Breast Cancer Data from The Cancer Genome Atlas (TCGA)