genelist


This data is in form of a 200 by 3 dataframe with genes/gene ids as rownames. The first column represents the chromosomal location of the genes (chromosome number). The second coloumn represents start position of the genes in terms of basepairs (bps) and the third coloumn represents end position of genes in terms of basepairs (bps) in their respective chromosomes. 


chromosome

genes

start position

end position

Computation of Quantitative Trait Loci hits in the selected gene set. Performing gene set validation with Quantitative Trait Loci information. Performing gene set enrichment analysis with available Quantitative Trait Loci data and computation of statistical significance value from gene set analysis. Obtaining the list of Quantitative Trait Loci hit genes along with their overlapped Quantitative Trait Loci names.

Samarendra Das

GSAQ

Gene Set Analysis with QTL

genelist function

A data frame with 200 rows as genes and the columns represent the chromosomal locations, start positions and end positions of respective genes.
  <dl> </dl> 

Format

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository.ncbi.nlm.nih.gov/geo/.
Ouyang S, Zhu W, Hamilton J, Lin H, Campbell M, et al. (2007) The TIGR Rice Genome Annotation Resource: improvements and new features. Nucleic Acids Research 35.

genelist: A list of genes of rice

Description

Usage

Arguments

Format

Source

Details

Examples