qtl_salt


This data is in form of a 13 by 3 dataframe with qtls/qtl ids as rownames. The first column reoresents the chromosomal location of the respective qtls (chromosome number). The second coloumn represents start position of the qtls in terms of basepairs (bps) and the third coloumn represents end position of qtls in terms of basepairs (bps) in their respective chromosomes. 


chromosome

qtls

start position

end position

base pair

Computation of Quantitative Trait Loci hits in the selected gene set. Performing gene set validation with Quantitative Trait Loci information. Performing gene set enrichment analysis with available Quantitative Trait Loci data and computation of statistical significance value from gene set analysis. Obtaining the list of Quantitative Trait Loci hit genes along with their overlapped Quantitative Trait Loci names.

Samarendra Das

GSAQ

Gene Set Analysis with QTL

qtl_salt function

A data frame with 13 rows as qtl and the columns represent the chromosomal locations, start positions and end positions of respective qtls.
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Format

Gramene QTL library (http://www.gramene.org/qtl/).
Ouyang S, Zhu W, Hamilton J, Lin H, Campbell M, et al. (2007) The TIGR Rice Genome Annotation Resource: improvements and new features. Nucleic Acids Research 35: D883-D887.

qtl_salt: A list of salt responsive Quantitative Trait Loci of rice

Description

Usage

Arguments

Format

Source

Details

Examples