simulatedData

GeneSets

objectMApathSim

study1Ex

study2Ex

study1Pheno

study2Pheno

<ul>
<li>study1Ex, study2Ex: two expression matrices.</li>
<li>study1Pheno, study2Pheno: two phenodata objects.</li>
<li>GeneSets: a list of gene sets with each element are the genes that
 belong to a pathway.</li>
<li>objectMApathSim: the meta-analysis object created from the different
 expression matrices and phenodatas.</li>
</ul>

objectMApath

Performing the different steps of gene set enrichment meta-analysis. It provides different functions that allow the application of meta-analysis based on the combination of effect sizes from different pathways in different studies to obtain significant pathways that are common to all of them.

Juan Antonio Villatoro-García

GSEMA

Gene Set Enrichment Meta-Analysis

Pablo Jurado-Bascón

Pedro Carmona-Sáez

simulatedData function

arrays (<code>study1Ex</code>, <code>study2Ex</code>), 
 data.frames (<code>study1Pheno</code>, <code>study2Pheno</code>),
 list vectors (<code>GeneSets</code>) and list of nested lists
 (<code>objectMApathSim</code>).

Format

GSEMA synthetic data — simulatedData

GSEMA synthetic data

simulatedData: GSEMA synthetic data

Description

Usage

Arguments

Format

References