check_gene_selection

Checking the arguments introduces in the gene selection process.

Mapper-based survival analysis with transcriptomics data is designed to carry out.
Mapper-based survival analysis is a modification of Progression Analysis of Disease (PAD)
where survival data is taken into account in the filtering function. More
details in: J. Fores-Martos, B. Suay-Garcia, R. Bosch-Romeu, M.C. Sanfeliu-Alonso,
A. Falco, J. Climent, "Progression Analysis of Disease with Survival (PAD-S) by SurvMap
identifies different prognostic subgroups of breast cancer in a large combined set of transcriptomics
and methylation studies" <doi:10.1101/2022.09.08.507080>.

Miriam Esteve

GSSTDA

Gene Structure Survival using Topological Data Analysis

Raquel Bosch

Jaume Forés

Joan Climent

Antonio Falco

check_gene_selection function

<dl><dt>num_genes</dt>
<dd>Number of genes in the full_data</dd>
<dt>gen_select_type</dt>
<dd>Type of gene selection to be used. Choose between "top_bot" (top-botton)
and "abs" (absolute)</dd>
<dt>percent_gen_select</dt>
<dd>Percentage of genes to be selected</dd></dl>

Arguments

check_gene_selection — check_gene_selection

<dl>

<dt>num_genes</dt>
<dd>Number of genes in the full_data</dd>


<dt>gen_select_type</dt>
<dd>Type of gene selection to be used. Choose between "top_bot" (top-botton)
and "abs" (absolute)</dd>


<dt>percent_gen_select</dt>
<dd>Percentage of genes to be selected</dd>

</dl>

check_gene_selection: check_gene_selection

Description

Usage

Value

Arguments