check_vectors

Checking the <code>survival_time</code>, <code>survival_event</code> and <code>case_tag</code> introduces in the <code>GSSTDA</code> object.

Mapper-based survival analysis with transcriptomics data is designed to carry out.
Mapper-based survival analysis is a modification of Progression Analysis of Disease (PAD)
where survival data is taken into account in the filtering function. More
details in: J. Fores-Martos, B. Suay-Garcia, R. Bosch-Romeu, M.C. Sanfeliu-Alonso,
A. Falco, J. Climent, "Progression Analysis of Disease with Survival (PAD-S) by SurvMap
identifies different prognostic subgroups of breast cancer in a large combined set of transcriptomics
and methylation studies" <doi:10.1101/2022.09.08.507080>.

Miriam Esteve

GSSTDA

Gene Structure Survival using Topological Data Analysis

Raquel Bosch

Jaume Forés

Joan Climent

Antonio Falco

check_vectors function

<dl><dt>full_data</dt>
<dd>The genes of the full_data (maybe remove by na.rm = TRUE)</dd>
<dt>survival_time</dt>
<dd>Time between disease diagnosis and death (if not dead until the end of follow-up).</dd>
<dt>survival_event</dt>
<dd><code>logical</code>. Whether the patient has died or not.</dd>
<dt>case_tag</dt>
<dd>The tag of the healthy patient (healthy or not).</dd>
<dt>na.rm</dt>
<dd><code>logical</code>. If <code>TRUE</code>, <code>NA</code> rows are omitted.
If <code>FALSE</code>, an error occurs in case of <code>NA</code> rows.</dd></dl>

Arguments

check_vectors — check_vectors

<dl>

<dt>full_data</dt>
<dd>The genes of the full_data (maybe remove by na.rm = TRUE)</dd>


<dt>survival_time</dt>
<dd>Time between disease diagnosis and death (if not dead until the end of follow-up).</dd>


<dt>survival_event</dt>
<dd><code>logical</code>. Whether the patient has died or not.</dd>


<dt>case_tag</dt>
<dd>The tag of the healthy patient (healthy or not).</dd>


<dt>na.rm</dt>
<dd><code>logical</code>. If <code>TRUE</code>, <code>NA</code> rows are omitted.
If <code>FALSE</code>, an error occurs in case of <code>NA</code> rows.</dd>

</dl>

check_vectors: check_vectors

Description

Usage

Value

Arguments