compute_node_adjacency

It computes the adjacency matrix between nodes. Two nodes
are considered connected if they share at least one individual.

Mapper-based survival analysis with transcriptomics data is designed to carry out.
Mapper-based survival analysis is a modification of Progression Analysis of Disease (PAD)
where survival data is taken into account in the filtering function. More
details in: J. Fores-Martos, B. Suay-Garcia, R. Bosch-Romeu, M.C. Sanfeliu-Alonso,
A. Falco, J. Climent, "Progression Analysis of Disease with Survival (PAD-S) by SurvMap
identifies different prognostic subgroups of breast cancer in a large combined set of transcriptomics
and methylation studies" <doi:10.1101/2022.09.08.507080>.

Miriam Esteve

GSSTDA

Gene Structure Survival using Topological Data Analysis

Raquel Bosch

Jaume Forés

Joan Climent

Antonio Falco

compute_node_adjacency function

<dl><dt>nodes_list</dt>
<dd>Output of the <code>levels_to_nodes</code> function. List of
character vectors. Each of the vectors contains the names of the
individuals at each node.</dd></dl>

Arguments

Computes the adjacency matrix. — compute_node_adjacency

<dl>

<dt>nodes_list</dt>
<dd>Output of the <code>levels_to_nodes</code> function. List of
character vectors. Each of the vectors contains the names of the
individuals at each node.</dd>

</dl>

compute_node_adjacency: Computes the adjacency matrix.

Description

Usage

Value

Arguments