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GUniFrac (version 1.2)

Generalized UniFrac Distances and Distance-Based Multivariate Analysis of Variance

Description

Implementation of generalized UniFrac distances for comparing microbial communities and three extensions to the PERMANOVA procedure. The three extensions are: (1) PERMANOVA using the Freedman-Lane permutation scheme; (2) PERMANOVA omnibus test using multiple matrices; and (3) Analytical approach to approximating PERMANOVA p-value.

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Version

Install

install.packages('GUniFrac')

Monthly Downloads

1,775

Version

1.2

License

GPL-3

Maintainer

Jun Chen

Last Published

May 3rd, 2021

Functions in GUniFrac (1.2)

adonis3

Permutational Multivariate Analysis of Variance Using Distance Matrices (Freedman-Lane permutation)
throat.tree

UPGMA tree of the OTUs from 16S sequencing of the throat microbiome samples.
GUniFrac-package

Generalized UniFrac distance for comparing microbial communities.
PermanovaG2

Permutational multivariate analysis of variance using multiple distance (Freedman-Lane permutation) matrices
PermanovaG

Permutational multivariate analysis of variance using multiple distance matrices
GUniFrac

Generalized UniFrac distances for comparing microbial communities.
throat.otu.tab

OTU count table from 16S sequencing of the throat microbiome samples.
Rarefy

Rarefy the OTU table to an equal sequencing depth
dmanova

Distance-based Multivariate Analysis of Variance (Analytical P-value Calculation)
throat.meta

Meta data of the throat microbiome samples.